Specificity of Furanoside–Protein Recognition through Antibody Engineering and Molecular Modeling

Recognition of furanosides (five‐membered ring sugars) by proteins plays important roles in host–pathogen interactions. In comparison to their six‐membered ring counterparts (pyranosides), detailed studies of the molecular motifs involved in the recognition of furanosides by proteins are scarce. Here the first in‐depth molecular characterization of a furanoside–protein interaction system, between an antibody (CS‐35) and cell wall polysaccharides of mycobacteria, including the organism responsible for tuberculosis is reported. The approach was centered on the generation of the single chain variable fragment of CS‐35 and a rational library of its mutants. Investigating the interaction from various aspects revealed the structural motifs that govern the interaction, as well as the relative contribution of molecular forces involved in the recognition. The specificity of the recognition was shown to originate mainly from multiple CH–π interactions and, to a lesser degree, hydrogen bonds formed in critical distances and geometries.     

Supercubooctahedron (Cs6Cl)2Cs5[Ga15Ge9Se48] Exhibiting Both Cation and Anion Exchange

A novel type of supertetrahedral connectivity is exhibited by the 72‐atom discrete supercubooctahedron in (Cs₆Cl)₂Cs₅[Ga₁₅Ge₉Se₄₈] ( 1 ), which undergoes both cation and anion exchange, as revealed by unambiguous single‐crystal X‐ray diffraction data. Electronic‐structure studies helped to understand the Ge/Ga distribution.     

Chloride‐Selective Electrodes Based on “Two‐Wall” Aryl‐Extended Calix[4]Pyrroles: Combining Hydrogen Bonds and Anion–π Interactions to Achieve Optimum Performance

The performance of chloride‐selective electrodes based on “two‐wall” aryl‐extended calix[4]pyrroles and multiwall carbon nanotubes is presented. The calix[4]pyrrole receptors bear two phenyl groups at opposite meso‐positions. When the meso‐phenyl groups are decorated with strong electron‐withdrawing substituents, attractive anion–π interactions may exist between the receptor’s aromatic walls and the sandwiched anion. These anion–π interactions are shown to significantly affect the selectivity of the electrodes. Calix[4]pyrrole, bearing a p‐nitro withdrawing group on each of the meso‐phenyl rings, afforded sensors that display anti‐Hofmeister behavior against the lipophilic salicylate and nitrate anions. Based on the experimental data, a series of principles that help in predicting the suitability of synthetic receptors for use as anion‐specific ionophores is discussed. Finally, the sensors deliver excellent results in the direct detection of chloride in bodily fluids.     

The Plasticity of the Carbohydrate Recognition Domain Dictates the Exquisite Mechanism of Binding of Human Macrophage Galactose-Type Lectin

The human macrophage galactose-type lectin (MGL), expressed on macrophages and dendritic cells (DCs), modulates distinct immune cell responses by recognizing N-acetylgalactosamine (GalNAc) containing structures present on pathogens, self-glycoproteins, and tumor cells. Herein, NMR spectroscopy and molecular dynamics (MD) simulations were used to investigate the structural preferences of MGL against different GalNAc-containing structures derived from the blood group A antigen, the Forssman antigen, and the GM2 glycolipid. NMR spectroscopic analysis of the MGL carbohydrate recognition domain (MGL-CRD, C181-H316) in the absence and presence of methyl α-GalNAc (α-MeGalNAc), a simple monosaccharide, shows that the MGL-CRD is highly dynamic and its structure is strongly altered upon ligand binding. This plasticity of the MGL-CRD structure explains the ability of MGL to accommodate different GalNAc-containing molecules. However, key differences are observed in the recognition process depending on whether the GalNAc is part of the blood group A antigen, the Forssman antigen, or GM2-derived structures. These results are in accordance with molecular dynamics simulations that suggest the existence of a distinct MGL binding mechanism depending on the context of GalNAc moiety presentation. These results afford new perspectives for the rational design of GalNAc modifications that fine tune MGL immune responses in distinct biological contexts, especially in malignancy.     

The Hydrogen Bond and Beyond: Perspectives for Rotational Investigations of Non-Covalent Interactions

In the last decade, experiment and theory have expanded our vision of non-covalent interactions (NCIs), shifting the focus from the conventional hydrogen bond to new bridging interactions involving a variety of weak donor/acceptor partners. Whereas most experimental data originate from condensed phases, the introduction of broadband (chirped-pulse) microwave fast-passage techniques has revolutionized the field of rotational spectroscopy, offering unexplored avenues for high-resolution studies in the gas phase. We present an outlook of hot topics for rotational investigations on isolated intermolecular clusters generated in supersonic jet expansions. Rotational spectra offer very detailed structural data, easily discriminating the isomeric or isotopic composition and effectively cancelling any solvent, crystal, or matrix bias. The direct comparison with quantum mechanical predictions provides insight into the origin of the inter- and intramolecular interactions with much greater precision than any other spectroscopic technique, simultaneously serving as test-bed for fine-tuning of theoretical methods. We present recent examples of rotational investigations around three topics: oligomer formation, chiral recognition, and identification of halogen, chalcogen, pnicogen, or tetrel bonds. The selected examples illustrate the benefits of rotational spectroscopy for the structural and energetic assessment of inter-/intramolecular interactions, which may help to move from fundamental research to applications in supramolecular chemistry and crystal engineering.     

Attaching tweezers like ionophore to a proton crane: theoretical design of new tautomeric sensors

ABSTRACT

The tautomeric optical sensors based on 4-(phenyldiazenyl)naphthalen-1-ol exist in their pure enol tautomeric form as free ligands, while the addition of metal ion fully shifts the equilibrium towards the keto tautomer allowing a red shift in the measured absorbance. This effect is achieved when a side ionophore group is connected to a tautomeric backbone by a spacer in a way that stabilizes the enol form via hydrogen boding. When the ionophore captures the metal ion the keto form is stabilized due to C─O tautomeric group participation in the complex. In the current study, we model theoretically the effect of symmetric tweezer like ionophores (RCOXCOR, where X, being CH or N, is the linker to the tautomeric backbone) on the tautomeric state and complexation ability of 4-(phenyldiazenyl)naphthalen-1-ol containing ligands. It was found that enol form stabilisation is achieved when R?=?NMe₂, independing on the linker. Both ligands are unsuitable for capturing alkali metal ions. The calculations predict that the complexation with alkali earth metal ions could lead to a full shift of the tautomeric equilibrium towards keto tautomer.     

Metal ion capacitor composed of the thin-walled surfaces enabling high-rate performance and long cycling stability

Electrochemical capacitors (referred to as supercapacitors) have high power density, long cycling stability, and are eco-friendly for use in electronic applications. The proper and stable utilization of supercapacitor systems can expand the practical scope of energy-powering applications in various device platforms. Nevertheless, the low energy density of conventional oxide and sulfide electrode materials still limits the practical realization of supercapacitor devices in real electronic applications. This limitation results from the poor surface stability, structural collapse, and low electrical conductivity of the oxide and sulfide materials. Single metal electrodes with multivalent metal ions exhibit promising energy-storing kinetics and may be viable alternatives to these oxide and sulfide electrode materials. Here, we report a metal zinc (Zn) electrode supercapacitor (ZIC) consisting of a thin-walled architecture as an electrode by means of a voltage-controlled electroplating method. The optimized ZIC exhibited excellent pseudo-capacitive performance, excellent high-rate performance, and an outstanding cycling stability.     

新型双吡啶盐的合成及其作为硝酸根离子荧光增强型探针的性能研究

阴离子普遍存在于生命体和环境中,在化学、生物学、医学和环境领域都具有重要的作用,而硝酸根是其中一种非常重要的无机阴离子,对环境和人体健康都具有极大危害。目前测定硝酸根离子的方法主要有电化学法、离子色谱法和离子选择性电极法等。虽然各方法各具优势,但也存在明显不足。电化学法重现性差,而离子色谱法和离子选择性电极法需要较为复杂、昂贵的仪器及较长的分析时间。荧光光谱由于具有较高的灵敏度和操作简便等优点,近年来成为阴离子识别和检测领域的研究热点。以吡喃盐为起始原料,设计合成了一种新型的双吡啶盐化合物,通过核磁共振1 H谱、13 C谱以及高分辨质谱确定了其分子结构。并研究了其与不同阴离子的荧光识别性能,显示出对硝酸根离子明显的特异性识别。在双吡啶盐溶液中滴加硝酸根离子后,荧光呈现显著增强,而其他竞争性阴离子则淬灭初始荧光。通过荧光滴定实验证实双吡啶盐探针与硝酸根离子形成稳定的1∶1超分子配合物,稳定常数lgK=5±0.02。通过计算机模拟计算以及变温核磁共振波谱表明硝酸根离子与双吡啶盐上活性氢形成稳定的氢键,并诱导整个双吡啶盐分子的共平面性增大,荧光强度增强,从而达到选择性识别的效果。     

A cucurbit[8]uril recognized rigid supramolecular polymer with photo-stimulated responsiveness

A rigid supramolecular polymer was constructed in aqueous solution via cucurbit[8]uril(CB[8]) host recognition with a rigid monomer containing an azobenzene unit and two 4,4'-bipyridin-1-ium(BP)moieties in the two ends, which also exhibited photo-responsiveness owing to the photoinduced trans–cis isomerization of azobenzene group.     

A New Concept for Obtaining SnO2 Fiber‐in‐Tube Nanostructures with Superior Electrochemical Properties

Tin oxide (SnO₂) nanotubes with a fiber‐in‐tube structure have been prepared by electrospinning and the mechanism of their formation has been investigated. Tin oxide‐carbon composite nanofibers with a filled structure were formed as an intermediate product, which were then transformed into SnO₂ nanotubes with a fiber‐in‐tube structure during heat treatment at 500 °C. Nanofibers with a diameter of 85 nm were found to be located inside hollow nanotubes with an outer diameter of 260 nm. The prepared SnO₂ nanotubes had well‐developed mesopores. The discharge capacities of the SnO₂ nanotubes at the 2nd and 300th cycles at a current density of 1 A g^?1 were measured as 720 and 640 mA h g^?1, respectively, and the corresponding capacity retention measured from the 2nd cycle was 88 %. The discharge capacities of the SnO₂ nanotubes at incrementally increased current densities of 0.5, 1.5, 3, and 5 A g^?1 were 774, 711, 652, and 591 mA h g^?1, respectively. The SnO₂ nanotubes with a fiber‐in‐tube structure showed superior cycling and rate performances compared to those of SnO₂ nanopowder. The unique structure of the SnO₂ nanotubes with a fiber@void@tube configuration improves their electrochemical properties by reducing the diffusion length of the lithium ions, and also imparts greater stability during electrochemical cycling.